Detailed information of SNP:
|
SNP ID:
sf0224673497(Gbrowse)
Chromosome: chr02 Position: 24673497 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.29% | 18.71% |
| All Indica | 797 | 74.53% | 25.47% |
| All Japonica | 496 | 92.34% | 7.66% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224673497 | C->T | INTERGENIC | None |