Detailed information of SNP:
|
SNP ID:
sf0224683065(Gbrowse)
Chromosome: chr02 Position: 24683065 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 85.60% | 14.40% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 481 | 59.67% | 40.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 320 | 62.81% | 37.19% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224683065 | G->A | INTERGENIC | None |