Detailed information of SNP:
|
SNP ID:
sf0224684459(Gbrowse)
Chromosome: chr02 Position: 24684459 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 86.70% | 13.30% |
| All Indica | 797 | 96.36% | 3.64% |
| All Japonica | 494 | 68.83% | 31.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 333 | 60.36% | 39.64% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224684459 | C->T | INTERGENIC | None |