Detailed information of SNP:
|
SNP ID:
sf0224693518(Gbrowse)
Chromosome: chr02 Position: 24693518 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 90.43% | 9.57% |
| All Indica | 792 | 91.04% | 8.96% |
| All Japonica | 495 | 88.69% | 11.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 205 | 81.95% | 18.05% |
| Temperate Japonica | 333 | 86.49% | 13.51% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224693518 | T->C | INTERGENIC | None |