Detailed information of SNP:
|
SNP ID:
sf0224697430(Gbrowse)
Chromosome: chr02 Position: 24697430 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 83.32% | 16.68% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 493 | 62.27% | 37.73% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 334 | 52.10% | 47.90% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224697430 | C->T | INTERGENIC | None |