Detailed information of SNP:
|
SNP ID:
sf0224701814(Gbrowse)
Chromosome: chr02 Position: 24701814 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 95.67% | 4.33% |
| All Indica | 768 | 97.79% | 2.21% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 198 | 95.45% | 4.55% |
| Indica Intermediate | 199 | 96.48% | 3.52% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224701814 | G->T | INTERGENIC | None |