Detailed information of SNP:
|
SNP ID:
sf0224717153(Gbrowse)
Chromosome: chr02 Position: 24717153 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.14% | 6.86% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224717153 | G->T | LOC_Os02g40784(LOC_Os02g40784.3) | INTRON |
| sf0224717153 | G->T | LOC_Os02g40784(LOC_Os02g40784.1) | INTRON |