Detailed information of SNP:
|
SNP ID:
sf0224717355(Gbrowse)
Chromosome: chr02 Position: 24717355 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 69.32% | 30.68% |
| All Indica | 793 | 60.66% | 39.34% |
| All Japonica | 490 | 88.16% | 11.84% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 373 | 75.60% | 24.40% |
| Indica II | 211 | 42.65% | 57.35% |
| Indica Intermediate | 209 | 52.15% | 47.85% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 92 | 55.43% | 44.57% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224717355 | G->A | LOC_Os02g40784(LOC_Os02g40784.3) | Synonymous |
| sf0224717355 | G->A | LOC_Os02g40784(LOC_Os02g40784.1) | Synonymous |