Detailed information of SNP:
|
SNP ID:
sf0224717884(Gbrowse)
Chromosome: chr02 Position: 24717884 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 91.51% | 8.49% |
| All Indica | 796 | 86.06% | 13.94% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224717884 | A->C | LOC_Os02g40784(LOC_Os02g40784.3) | INTRON |
| sf0224717884 | A->C | LOC_Os02g40784(LOC_Os02g40784.1) | INTRON |