Detailed information of SNP:
|
SNP ID:
sf0224722300(Gbrowse)
Chromosome: chr02 Position: 24722300 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 89.12% | 10.88% |
| All Indica | 797 | 86.20% | 13.80% |
| All Japonica | 496 | 93.55% | 6.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224722300 | A->G | INTERGENIC | None |