Detailed information of SNP:
|
SNP ID:
sf0224727262(Gbrowse)
Chromosome: chr02 Position: 24727262 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 65.32% | 34.68% |
| All Indica | 797 | 95.61% | 4.39% |
| All Japonica | 497 | 11.27% | 88.73% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224727262 | T->G | LOC_Os02g40810(LOC_Os02g40810.1) | UTR_5_PRIME |