Detailed information of SNP:
|
SNP ID:
sf0224730839(Gbrowse)
Chromosome: chr02 Position: 24730839 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 60.31% | 39.69% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224730839 | G->A | INTERGENIC | None |