Detailed information of SNP:



SNP ID: sf0224741748(Gbrowse)

Chromosome: chr02

Position: 24741748
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1418 98.66% 1.34%
All Indica799 100.00% 0.00%
All Japonica496 96.57% 3.43%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica93 82.80% 17.20%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0224741748 A->C LOC_Os02g40830(LOC_Os02g40830.3) UTR_3_PRIME
sf0224741748 A->C LOC_Os02g40830(LOC_Os02g40830.2) UTR_3_PRIME
sf0224741748 A->C LOC_Os02g40830(LOC_Os02g40830.1) UTR_3_PRIME