Detailed information of SNP:
SNP ID:
sf0224741748(Gbrowse)
Chromosome: chr02 Position: 24741748 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 98.66% | 1.34% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 496 | 96.57% | 3.43% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 93 | 82.80% | 17.20% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0224741748 | A->C | LOC_Os02g40830(LOC_Os02g40830.3) | UTR_3_PRIME |
sf0224741748 | A->C | LOC_Os02g40830(LOC_Os02g40830.2) | UTR_3_PRIME |
sf0224741748 | A->C | LOC_Os02g40830(LOC_Os02g40830.1) | UTR_3_PRIME |