Detailed information of SNP:
|
SNP ID:
sf0224761842(Gbrowse)
Chromosome: chr02 Position: 24761842 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 66.24% | 33.76% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 496 | 16.13% | 83.87% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224761842 | G->T | LOC_Os02g40860(LOC_Os02g40860.1) | INTRON |