Detailed information of SNP:
|
SNP ID:
sf0224769461(Gbrowse)
Chromosome: chr02 Position: 24769461 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 55.63% | 44.37% |
| All Indica | 791 | 86.22% | 13.78% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 210 | 84.29% | 15.71% |
| Indica Intermediate | 208 | 71.15% | 28.85% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224769461 | G->A | INTERGENIC | None |