Detailed information of SNP:
|
SNP ID:
sf0224770009(Gbrowse)
Chromosome: chr02 Position: 24770009 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.55% | 45.45% |
| All Indica | 799 | 85.73% | 14.27% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224770009 | C->T | INTERGENIC | None |