Detailed information of SNP:
|
SNP ID:
sf0224782093(Gbrowse)
Chromosome: chr02 Position: 24782093 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.98% | 42.02% |
| All Indica | 796 | 90.95% | 9.05% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224782093 | G->A | INTERGENIC | None |