Detailed information of SNP:
|
SNP ID:
sf0224782650(Gbrowse)
Chromosome: chr02 Position: 24782650 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 54.08% | 45.92% |
| All Indica | 791 | 29.46% | 70.54% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 368 | 20.92% | 79.08% |
| Indica II | 212 | 35.85% | 64.15% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224782650 | G->T | INTERGENIC | None |