Detailed information of SNP:
|
SNP ID:
sf0224785411(Gbrowse)
Chromosome: chr02 Position: 24785411 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 56.18% | 43.82% |
| All Indica | 787 | 85.51% | 14.49% |
| All Japonica | 493 | 8.52% | 91.48% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 205 | 76.10% | 23.90% |
| Temperate Japonica | 331 | 4.53% | 95.47% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224785411 | C->T | INTERGENIC | None |