Detailed information of SNP:
|
SNP ID:
sf0224786053(Gbrowse)
Chromosome: chr02 Position: 24786053 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.57% | 46.43% |
| All Indica | 798 | 69.92% | 30.08% |
| All Japonica | 492 | 26.02% | 73.98% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 330 | 25.76% | 74.24% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224786053 | C->G | INTERGENIC | None |