Detailed information of SNP:
SNP ID:
sf0224787727(Gbrowse)
Chromosome: chr02 Position: 24787727 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 96.33% | 3.67% |
All Indica | 798 | 97.62% | 2.38% |
All Japonica | 497 | 99.40% | 0.60% |
Aus | 67 | 86.57% | 13.43% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 212 | 96.70% | 3.30% |
Indica Intermediate | 211 | 94.31% | 5.69% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 14.29% | 85.71% |
Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0224787727 | G->A | INTERGENIC | None |