Detailed information of SNP:
|
SNP ID:
sf0224789132(Gbrowse)
Chromosome: chr02 Position: 24789132 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 51.84% | 48.16% |
| All Indica | 797 | 67.75% | 32.25% |
| All Japonica | 494 | 24.29% | 75.71% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 332 | 24.10% | 75.90% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224789132 | A->C | INTERGENIC | None |