Detailed information of SNP:
|
SNP ID:
sf0224791668(Gbrowse)
Chromosome: chr02 Position: 24791668 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 76.27% | 23.73% |
| All Indica | 795 | 91.57% | 8.43% |
| All Japonica | 488 | 52.66% | 47.34% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 209 | 78.47% | 21.53% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 330 | 60.00% | 40.00% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224791668 | G->A | LOC_Os02g40920(LOC_Os02g40920.1) | Non-Synonymous SNP |