Detailed information of SNP:
|
SNP ID:
sf0224792160(Gbrowse)
Chromosome: chr02 Position: 24792160 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 96.05% | 3.95% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224792160 | G->A | LOC_Os02g40920(LOC_Os02g40920.1) | Non-Synonymous SNP |