Detailed information of SNP:
|
SNP ID:
sf0224797040(Gbrowse)
Chromosome: chr02 Position: 24797040 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 93.05% | 6.95% |
| All Indica | 753 | 87.78% | 12.22% |
| All Japonica | 492 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 90.46% | 9.54% |
| Indica II | 209 | 87.56% | 12.44% |
| Indica Intermediate | 198 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224797040 | T->C | LOC_Os02g40930(LOC_Os02g40930.1) | INTRON |