Detailed information of SNP:
|
SNP ID:
sf0224797944(Gbrowse)
Chromosome: chr02 Position: 24797944 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 89.94% | 10.06% |
| All Indica | 796 | 91.71% | 8.29% |
| All Japonica | 475 | 91.16% | 8.84% |
| Aus | 64 | 51.56% | 48.44% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 74.76% | 25.24% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 322 | 92.55% | 7.45% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 61 | 73.77% | 26.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224797944 | C->T | LOC_Os02g40930(LOC_Os02g40930.1) | INTRON |