Detailed information of SNP:
|
SNP ID:
sf0224811218(Gbrowse)
Chromosome: chr02 Position: 24811218 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 85.22% | 14.78% |
| All Indica | 794 | 75.31% | 24.69% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 78.34% | 21.66% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 207 | 64.25% | 35.75% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224811218 | C->A | LOC_Os02g41450(LOC_Os02g41450.1) | INTRON |