Detailed information of SNP:
|
SNP ID:
sf0224811428(Gbrowse)
Chromosome: chr02 Position: 24811428 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 94.84% | 5.16% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 494 | 85.83% | 14.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224811428 | G->A | LOC_Os02g41450(LOC_Os02g41450.1) | INTRON |