Detailed information of SNP:
|
SNP ID:
sf0224811973(Gbrowse)
Chromosome: chr02 Position: 24811973 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 96.19% | 3.81% |
| All Indica | 797 | 96.11% | 3.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224811973 | A->G | LOC_Os02g41450(LOC_Os02g41450.1) | INTRON |