Detailed information of SNP:
|
SNP ID:
sf0224812038(Gbrowse)
Chromosome: chr02 Position: 24812038 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 62.90% | 37.10% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 493 | 19.27% | 80.73% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 332 | 16.87% | 83.13% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224812038 | G->A | LOC_Os02g41450(LOC_Os02g41450.1) | INTRON |