Detailed information of SNP:
|
SNP ID:
sf0224812064(Gbrowse)
Chromosome: chr02 Position: 24812064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 96.26% | 3.74% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224812064 | G->A | LOC_Os02g41450(LOC_Os02g41450.1) | INTRON |