Detailed information of SNP:
SNP ID:
sf0224813395(Gbrowse)
Chromosome: chr02 Position: 24813395 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1412 | 94.26% | 5.74% |
All Indica | 793 | 90.54% | 9.46% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 210 | 76.19% | 23.81% |
Indica Intermediate | 208 | 88.46% | 11.54% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0224813395 | C->T | LOC_Os02g41450(LOC_Os02g41450.1) | INTRON |