Detailed information of SNP:
|
SNP ID:
sf0224814643(Gbrowse)
Chromosome: chr02 Position: 24814643 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 72.05% | 27.95% |
| All Indica | 795 | 55.85% | 44.15% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 63.64% | 36.36% |
| Indica II | 211 | 48.82% | 51.18% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224814643 | C->G | INTERGENIC | None |