Detailed information of SNP:
|
SNP ID:
sf0224815484(Gbrowse)
Chromosome: chr02 Position: 24815484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.80% | 30.20% |
| All Indica | 797 | 52.32% | 47.68% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 61.23% | 38.77% |
| Indica II | 212 | 47.64% | 52.36% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224815484 | C->T | INTERGENIC | None |