Detailed information of SNP:
|
SNP ID:
sf0224818032(Gbrowse)
Chromosome: chr02 Position: 24818032 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 94.92% | 5.08% |
| All Indica | 797 | 91.84% | 8.16% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224818032 | C->T | INTERGENIC | None |