Detailed information of SNP:
|
SNP ID:
sf0224818944(Gbrowse)
Chromosome: chr02 Position: 24818944 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 87.58% | 12.42% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 496 | 86.29% | 13.71% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224818944 | T->G | INTERGENIC | None |