Detailed information of SNP:
|
SNP ID:
sf0224824400(Gbrowse)
Chromosome: chr02 Position: 24824400 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 69.48% | 30.52% |
| All Indica | 789 | 50.95% | 49.05% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 373 | 38.07% | 61.93% |
| Indica II | 208 | 66.83% | 33.17% |
| Indica Intermediate | 208 | 58.17% | 41.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224824400 | G->T | INTERGENIC | None |