Detailed information of SNP:
|
SNP ID:
sf0224830078(Gbrowse)
Chromosome: chr02 Position: 24830078 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.09% | 11.91% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224830078 | C->T | INTERGENIC | None |