Detailed information of SNP:
|
SNP ID:
sf0224839037(Gbrowse)
Chromosome: chr02 Position: 24839037 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1282 | 74.10% | 25.90% |
| All Indica | 791 | 94.44% | 5.56% |
| All Japonica | 377 | 26.79% | 73.21% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 250 | 28.80% | 71.20% |
| Tropical Japonica | 74 | 16.22% | 83.78% |
| Japonica Intermediate | 53 | 32.08% | 67.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 82.35% | 17.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224839037 | T->A | INTERGENIC | None |