Detailed information of SNP:
|
SNP ID:
sf0224848850(Gbrowse)
Chromosome: chr02 Position: 24848850 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.75% | 32.25% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 495 | 17.37% | 82.63% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 18.02% | 81.98% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224848850 | T->G | LOC_Os02g41470(LOC_Os02g41470.3) | INTRON |
| sf0224848850 | T->G | LOC_Os02g41470(LOC_Os02g41470.1) | INTRON |
| sf0224848850 | T->G | LOC_Os02g41470(LOC_Os02g41470.2) | INTRON |