Detailed information of SNP:
|
SNP ID:
sf0224850611(Gbrowse)
Chromosome: chr02 Position: 24850611 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 92.09% | 7.91% |
| All Indica | 796 | 86.81% | 13.19% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224850611 | A->T | LOC_Os02g41470(LOC_Os02g41470.3) | INTRON |
| sf0224850611 | A->T | LOC_Os02g41470(LOC_Os02g41470.1) | INTRON |
| sf0224850611 | A->T | LOC_Os02g41470(LOC_Os02g41470.2) | INTRON |