Detailed information of SNP:
|
SNP ID:
sf0224860380(Gbrowse)
Chromosome: chr02 Position: 24860380 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 80.16% | 19.84% |
| All Indica | 798 | 69.30% | 30.70% |
| All Japonica | 495 | 93.74% | 6.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 66.31% | 33.69% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224860380 | G->A | INTERGENIC | None |