Detailed information of SNP:
|
SNP ID:
sf0224869603(Gbrowse)
Chromosome: chr02 Position: 24869603 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 79.45% | 20.55% |
| All Indica | 798 | 71.93% | 28.07% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 374 | 66.84% | 33.16% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224869603 | G->A | INTERGENIC | None |