Detailed information of SNP:
|
SNP ID:
sf0224870643(Gbrowse)
Chromosome: chr02 Position: 24870643 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.22% | 6.78% |
| All Indica | 796 | 90.95% | 9.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 74.76% | 25.24% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224870643 | C->T | INTERGENIC | None |