Detailed information of SNP:
|
SNP ID:
sf0224883439(Gbrowse)
Chromosome: chr02 Position: 24883439 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 93.55% | 6.45% |
| All Indica | 786 | 93.26% | 6.74% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 202 | 89.11% | 10.89% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224883439 | G->A | INTERGENIC | None |