Detailed information of SNP:
|
SNP ID:
sf0224917537(Gbrowse)
Chromosome: chr02 Position: 24917537 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 96.23% | 3.77% |
| All Indica | 786 | 95.42% | 4.58% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 202 | 97.03% | 2.97% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224917537 | G->A | INTERGENIC | None |