Detailed information of SNP:
|
SNP ID:
sf0224942762(Gbrowse)
Chromosome: chr02 Position: 24942762 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 83.85% | 16.15% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 59.27% | 40.73% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 50.75% | 49.25% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224942762 | G->A | INTERGENIC | None |