Detailed information of SNP:
|
SNP ID:
sf0224952486(Gbrowse)
Chromosome: chr02 Position: 24952486 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 94.30% | 5.70% |
| All Indica | 790 | 90.38% | 9.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 204 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224952486 | A->T | LOC_Os02g41610(LOC_Os02g41610.1) | Non-Synonymous SNP |