Detailed information of SNP:
|
SNP ID:
sf0224957903(Gbrowse)
Chromosome: chr02 Position: 24957903 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.83% | 24.17% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 44.06% | 55.94% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224957903 | A->T | INTERGENIC | None |