Detailed information of SNP:
|
SNP ID:
sf0224967453(Gbrowse)
Chromosome: chr02 Position: 24967453 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 79.03% | 20.97% |
| All Indica | 796 | 71.36% | 28.64% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224967453 | G->A | INTERGENIC | None |